MRIQC: individual T1w report

Summary

Subject ID: 030_ControlPre.
Date and time: 2018-05-06, 22:29.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2680633974028946
cnr			4.205731730452323
efc			0.5701032672794021
fber			124.26522064208984
fwhm	avg		3.9661299999999997
fwhm	x		3.86096
fwhm	y		4.16298
fwhm	z		3.87445
icvs	csf		0.19311216443350848
icvs	gm		0.46430644884947386
icvs	wm		0.34258138671701766
inu	med		0.7551570534706116
inu	range		0.25368091464042664
qi	1		0.0
qi	2		0.0007064540845584702
rpve	csf		25.251614951502862
rpve	gm		11.946611516676183
rpve	wm		18.79674882838133
size	x		180
size	y		256
size	z		256
snr	csf		2.802675551419396
snr	gm		10.433986627765691
snr	total		9.623975080153357
snr	wm		15.635263061274983
snrd	csf		16.66041070648861
snrd	gm		31.45861446763656
snrd	total		32.77555562862242
snrd	wm		50.20764171174209
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.4841461491775236
summary	bg	mad	13.04870319366455
summary	bg	mean	45.526729583740234
summary	bg	median	44.171958923339844
summary	bg	n	2854881.0
summary	bg	p05	26.130002975463867
summary	bg	p95	69.59378051757812
summary	bg	stdv	13.680598258972168
summary	csf	k	3.7846325750607983
summary	csf	mad	125.18460083007812
summary	csf	mean	336.0317687988281
summary	csf	median	331.8343505859375
summary	csf	n	12318.0
summary	csf	p05	158.36677246093748
summary	csf	p95	522.3801147460936
summary	csf	stdv	118.39432525634766
summary	gm	k	0.14774541775307215
summary	gm	mad	58.746437072753906
summary	gm	mean	624.7046508789062
summary	gm	median	626.578125
summary	gm	n	43478.0
summary	gm	p05	523.0306335449219
summary	gm	p95	720.2158416748048
summary	gm	stdv	60.050960540771484
summary	wm	k	1.9970680919618111
summary	wm	mad	41.357669830322266
summary	wm	mean	985.5755004882812
summary	wm	median	1000.0125732421875
summary	wm	n	185630.0
summary	wm	p05	839.3344024658203
summary	wm	p95	1060.1872009277345
summary	wm	stdv	63.958621978759766
tpm	overlap	csf	0.20254629850387573
tpm	overlap	gm	0.5355372428894043
tpm	overlap	wm	0.5517828464508057
wm2max			0.7113825851092789

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	049eaedb9cc0c1fa28ef32b52b7f1f99
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.