MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2680633974028946
cnr4.205731730452323
efc0.5701032672794021
fber124.26522064208984
fwhmavg3.9661299999999997
fwhmx3.86096
fwhmy4.16298
fwhmz3.87445
icvscsf0.19311216443350848
icvsgm0.46430644884947386
icvswm0.34258138671701766
inumed0.7551570534706116
inurange0.25368091464042664
qi10.0
qi20.0007064540845584702
rpvecsf25.251614951502862
rpvegm11.946611516676183
rpvewm18.79674882838133
sizex180
sizey256
sizez256
snrcsf2.802675551419396
snrgm10.433986627765691
snrtotal9.623975080153357
snrwm15.635263061274983
snrdcsf16.66041070648861
snrdgm31.45861446763656
snrdtotal32.77555562862242
snrdwm50.20764171174209
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.4841461491775236
summarybgmad13.04870319366455
summarybgmean45.526729583740234
summarybgmedian44.171958923339844
summarybgn2854881.0
summarybgp0526.130002975463867
summarybgp9569.59378051757812
summarybgstdv13.680598258972168
summarycsfk3.7846325750607983
summarycsfmad125.18460083007812
summarycsfmean336.0317687988281
summarycsfmedian331.8343505859375
summarycsfn12318.0
summarycsfp05158.36677246093748
summarycsfp95522.3801147460936
summarycsfstdv118.39432525634766
summarygmk0.14774541775307215
summarygmmad58.746437072753906
summarygmmean624.7046508789062
summarygmmedian626.578125
summarygmn43478.0
summarygmp05523.0306335449219
summarygmp95720.2158416748048
summarygmstdv60.050960540771484
summarywmk1.9970680919618111
summarywmmad41.357669830322266
summarywmmean985.5755004882812
summarywmmedian1000.0125732421875
summarywmn185630.0
summarywmp05839.3344024658203
summarywmp951060.1872009277345
summarywmstdv63.958621978759766
tpmoverlapcsf0.20254629850387573
tpmoverlapgm0.5355372428894043
tpmoverlapwm0.5517828464508057
wm2max0.7113825851092789

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum049eaedb9cc0c1fa28ef32b52b7f1f99
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.